Projects
- GTP hydrolysis in signal transduction protein; Ras
- Translating protein with "Translocon"
- Calcium binding in Calmodulin
- Electron transfer in protein system
- Proton transfer in water and ice
Publications
- Exploring bimolecular machines: energy landscape control of biological
reactions
Phil. Trans. R. Soc. B. 361,1439-1443, (2006)
J. N. Onuchic, C. Kobayashi, O. Miyashita, P. Jennings and K. K. Baldridge
- Protein grabs a ligand by extending anchor residues: Molecular
simulation for Ca2+ binding to calmodulin loop
Biophysical. J.90, 3043-3051 (2006)
C. Kobayashi, S. Takada
- Multiple versus single pathways in electron transfer in proteins:
Influence of protein dynamics and hydrogen bonds
J. Chem. Phys. 119, 3550-3558 (2003).
C. Kobayashi, K. Baldridge and J. N. Onuchic
- Landscape of Water Dynamics and Chemical Reactions
in "New Kind of Phase Transitions: Transformation in Disordered
Substances",
edited by V. V. Brazhkin, S.V. Buldyrev, V. N. Ryzov, H. G.
Stanley, NATO
ASI Series, Kluwer Academic Publisher, London, pp613-622. (2002).
I. Ohmine, M. Matsumoto, S. Saito, A. Baba, Y. Yonekura, S. Ogasawara,
H. Inagaki and C. Kobayashi
- Mechanism of proton transfer in ice. II.: Hydration, modes,
and transport
J. Chem. Phys. 115, 4742-4749 (2001).
C. Kobayashi, S. Saito and I. Ohmine
- Mechanism of fast proton transfer in ice: Potential energy
surface and reaction coordinate analyses
J. Chem. Phys. 113, 9090-9100 (2000).
C. Kobayashi, S. Saito and I. Ohmine
- Liquid Water Dynamics; Hydrogen Bond Rearrangement, Phase
Space Dynamics and Proton Transfer
in "The Physics of Complex Liquids", edited by F. Yonezawa, K.
Tuji, M. Doi and T. Fujiwara,
World Scientific, Singapore, pp 324-338 (1998).
M. Matsumoto, S. Saito, C. Kobayashi and I. Ohmine
- Dynamics of Proton Attachment to Water Cluster; Proton
Transfer,
Evaporation and Relaxation
J. Chem. Phys. 105, 6358-6366 (1996).
C. Kobayashi, K. Iwahashi, S. Saito and I. Ohmine